Neuro-Electronics Research Flanders

Publications

  • Mols K, Musa S, Nuttin B, Lagae L, Bonin V, “In vivo characterization of the electrophysiological and astrocytic responses to a silicon neuroprobe implanted in the mouse neocortex”, Scientific Reports, 7(1):15642, (2017)
  • James J. Jun et al, “Fully integrated silicon probes for high-density recording of neural activity”, Nature, 551(7679):232-236, (2017)
  • Tanila H, Ku S, Kloosterman F, Wilson MA, “Characteristics of CA1 place fields in a complex maze with multiple choice points”, Hippocampus, (2017)
  • Urban A, Golgher L, Brunner C, Gdalyahu A, Har-Gil H, Kain D, Montaldo G, Sironi L, Blinder P, “Understanding the neurovascular unit at multiple scales: Advantages and limitations of multi-photon and functional ultrasound imaging”, Adv Drug Deliv Rev, 119, (2017)
  • Mao, D, Kandler, S, McNaughton, BL, and Bonin, V, “Sparse orthogonal population representation of spatial context in the retrosplenial cortex.”, Nat Commun, 8, 243, (2017)
  • Adam R Neumann et al, “Involvement of fast-spiking cells in ictal sequences during spontaneous seizures in rats with chronic temporal lobe epilepsy”, BRAIN, Brain, Volume 140, Issue 9, 1 September 2017, (2017)
  • Ciliberti D, Kloosterman F, “Falcon: a highly flexible open-source software for closed-loop neuroscience”, IOPscience , (2017)
  • Lee WC, Bonin V, Reed M, Graham BJ, Hood G, Glattfelder K, Reid RC, “Anatomy and function of an excitatory network in the visual cortex”, Nature, (2016)
  • Welkenhuysen M, Hoffman L, Luo Z, De Proft A, Van den Haute C, Baekelandt V, Debyser Z, Gielen G, Puers R, Braeken D, “An integrated multi-electrode-optrode array for in vitro optogenetics”, Scientific Reports, 6:20353, (2016)
  • Vendrell-Lopis N, Yaksi E, “Evolutionary conserved brainstem circuits encode category, concentration and mixtures of taste”, Scientific Reports, 5:17825 , (2015)
  • Gomperts SN, Kloosterman F, Wilson MA, “VTA neurons coordinate with the hippocampal reactivation of spatial experience”, eLife, 4, (2015)
  • Jones IL, Russell TL, Farrow K, Fiscella M, Franke F, Müller J, Jäckel D and Hierlemann A, “A method for electrophysiological characterization of hamster retinal ganglion cells using a high-density CMOS microelectrode array”, Frontiers in Neuroscience, Volume 9, Article 360, (2015)
  • Basaldella E, Takeoka A, Sigrist M and Arber S, “Multisensory signaling shapes vestibulo-motor circuit specificity”, Cell, 2, (2015)
  • Sodkomkham D, Ciliberti D, Wilson MA, Fukui K, Moriyama K, Numao M, Kloosterman F, “Kernel density compression for real-time Bayesian encoding/decoding of unsorted hippocampal spikes”, Knowledge-Based Systems, (2015)
  • Urban A, Dussaux C, Martel G, Brunner C, Mace E, Montaldo G, “Real-time imaging of brain activity in freely moving rats using functional ultrasound”, Nature Methods, 12, 873-8, (2015)
  • L Hoffman, M Welkenhuysen, A Andrei, S Musa, Z Luo, S Libbrecht, S Severi, P Soussan, V Baekelandt, S Haesler, G Gielen, R Puers, D Braeken, “High density optrode-electrode neural probe using SixNy photonics for in vivo optogenetics.”, IEEE International Electron Devices Meeting 2015, (2015)
  • Fiscella M, Franke F, Farrow K, Müller J, Roska B, Azeredo da Silveira R, Hierlemann A, “Visual coding with a population of direction-selective neurons”, Journal of Neurophysiology, 114(4):2485-2499, (2015)
  • Zhang J, Mitra S, Suo Y, Cheng A, Xiong T, Michon F, Welkenhuysen M, Kloosterman F, Chin PS, Hsiao S, Tran TD, Yazicioglu F and Etienne-Cummings R, “A closed-loop compressive-sensing-based neural recording system”, Journal of Neural Engineering, 12(3):036005, (2015)
  • Battaglia FP, Borensztajn G, Bod R, “Structured cognition and neural systems: from rats to language”, Neuroscience and Biobehavioral Reviews, 36(7):1626-39, (2015)
  • Rossier J Bernard A Cabungcal J Perrenoud Q Savoye A Gallopin T Hawrylycz M Cuenod M Do K Urban A* Lein E* (* These authors contributed equally), “Cortical fast-spiking parvalbumin interneurons enwrapped in the perineuronal net express the metallopeptidases Adamts8, Adamts15 and Neprilysin”, Molecular Psychiatry , 20, 154-61, (2015)
  • Genzel L, Kroes MC, Dresler M, Battaglia FP, “Light sleep versus slow wave sleep in memory consolidation: a question of global versus local processes?”, Trends in Neurosciences, 37(1):10-9, (2015)
  • Takeoka A, Vollenweider I, Courtine G, and Arber S, “Muscle spindle feedback directs locomotor recovery and circuit reorganization after spinal cord injury”, Cell, 7, (2014)
  • Szikra T, Trenholm S, Drinnenberg A, Jüttner J, Raics Z, Farrow K, Biel M, Awatramani G, Clark DA, Sahel JA, da Silveira RA, Roska B, “Rods in daylight act as relay cells for cone-driven horizontal cell-mediated surround inhibition”, Nature Neuroscience, 17(12):1728-35, (2014)
  • Urban A, Mace E, Brunner C, Heidmann M, Rossier J, Montaldo G, “Chronic assessment of cerebral hemodynamics during rat forepaw electrical stimulation using functional ultrasound imaging”, Neuroimage, 101, 138-49, (2014)
  • Christiaens JF† Franco LM†, Cools T, De Meester L, Michiels J, Wenseleers T, Hassan BA, YaksiE* and Verstrepen KJ,* († Equal Contributions,* co-last corresponding authors), “The Fungal Aroma Gene ATF1 Promotes Dispersal of Yeast Cells through Insect Vectors”, Cell Reports, 9(2):425-32, (2014)
  • Goldey GJ, Roumis DK, Glickfeld LL, Kerlin AM, Reid RC, Bonin V, Schafer DP and Andermann ML, “Removable cranial windows for long-term imaging in awake mice”, Nature Protocols, 9, 2515–2538, (2014)
  • Hüsken U, Stickney HL , GestriG, Bianco IH, Faro A, Young RM, Roussigne M, Hawkins TA, Beretta CA, Brinkmann I, Paolini A, Jacinto R, Albadri S, Dreosti E, Tsalavouta M, Schwarz Q, Cavodeassi F, Barth AK, Wen L, Zhang B, Blader P, Yaksi E, Poggi L, Zigman M, Lin S, Wilson SW, Carl M, “Tcf7l2 is required for left-right asymmetric differentiation of habenular neurons”, Current Biology, 24(19):2217-27, (2014)
  • Yazicioglu F, Lopez CM, Mitra S, Raducanu B, Musa S and Kloosterman F, “Ultra-high-density in-vivo neural probes”, Conf Proc IEEE Eng Med Biol Soc., 2014:2032-5, (2014)
  • Busskamp V, Krol J, Nelidova D, Daum J, Szikra T, Tsuda B, Jüttner J, Farrow K, Scherf BG, Alvarez CP, Genoud C, Sothilingam V, Tanimoto N, Stadler M, Seeliger M, Stoffel M, Filipowicz W, Roska B, “miRNAs 182 and 183 are necessary to maintain adult cone photoreceptor outer segments and visual function”, Neuron, 83(3):586-600, (2014)
  • Nguyen TK, Navratilova Z, Cabral H, Wang L, Gielen G, Battaglia FP, Bartic C, “Closed-loop optical neural stimulation based on a 32-channel low-noise recording system with online spike sorting”, Journal of Neural Engineering, 11(4):046005, (2014)
  • Dreosti E, Vendrell Llopis N, Carl M, Yaksi E, Wilson SW, “Left-Right Asymmetry Is Required for the Habenulae to Respond to Both Visual and Olfactory Stimuli”, Current Biology, S0960-9822(14)00017-7, (2014)
  • Jetti SK, Vendrell-Llopis N, Yaksi E, “Spontaneous Activity Governs Olfactory Representations in Spatially Organized Habenular Microcircuits.”, Current Biology, 24, 1–6, (2014)
  • Kloosterman F, Layton SP, Chen Z, Wilson MA, “Bayesian decoding using unsorted spikes in the rat hippocampus”, Journal of Neurophysiology, 111(1):217-27, (2014)
  • Cabral HO, Vinck M, Fouquet C, Pennartz CM, Rondi-Reig L, Battaglia FP, “Oscillatory dynamics and place field maps reflect hippocampal ensemble processing of sequence and place memory under NMDA receptor control”, Neuron, 81(2):402-15, (2014)
  • Niell CM, Bonin V, Andermann ML, “Functional organization of circuits in the rodent primary visual cortex”, in The New Visual Neurosciences. Werner JS, Chalupa LM, editors., Cambridge, MA: The MIT Press; pp 409-424., (2013)
  • Yonehara K*, Farrow K*, Ghanem A, Hillier D, Balint K, Teixeira M, Jüttner J, Noda M, Neve RL, Conzelmann KK, Roska B, “The first stage of cardinal direction selectivity is localized to the dendrites of retinal ganglion cells”, Neuron, 79:1078-1085, (2013)
  • Farrow K, Teixeira M, Szikra T, Viney TJ, Balint K, Yonehara K, Roska B , “Ambient illumination toggles a neuronal circuit switch in the retina and visual perception at cone threshold.”, Neuron, 78: 325-338, (2013)
  • Espuny-Camacho I, Michelsen KA, Gall D, Linaro D, Hasche A, Bonnefont J, Bali C, Orduz D, Bilheu A, Herpoel A, Lambert N, Gaspard N, Péron S, Schiffmann SN, Giugliano M, Gaillard A, Vanderhaeghen P., “Pyramidal neurons derived from human pluripotent stem cells integrate efficiently into mouse brain circuits in vivo.”, Neuron, 77(3):440-56, (2013)
  • Glickfeld LL, Andermann ML, Bonin V, Reid RC, “Cortico-cortical projections in mouse visual cortex are functionally target specific”, Nature Neuroscience, 16(2):219-26, (2013)
  • Florence Kermen, Luis M. Franco, Cameron Wyatt and Emre Yaksi, “Neural circuits mediating olfactory-driven behavior in fish”, Frontiers in Neural Circuits, 7:62, (2013)
  • Jurisch-Yaksi N, Rose AJ, Lu H, Raemaekers T, Munck S, Baatsen P, Baert V, Vermeire W, Scales SJ, Verleyen D, Vandepoel R, Tylzanowski P, Yaksi E, de Ravel T, Yost HJ, Froyen G, Arrington CB, Annaert W, “Rer1p maintains ciliary length and signaling by regulating γ-secretase activity and Foxj1a levels”, The Journal of Cell Biology, Mar 18;200(6):709-20, (2013)
  • Fiscella M, Farrow K, Jones IL, Jackel D, Muller J, Frey U, Bakkum DJ, Roska B, Hierlemann A, “Recording from defined populations of retinal ganglion cells using a high-density CMOS-integrated microelectrode array with real-time switchable electrode selection”, Journal of Neuroscience Methods, 211(1):103-13, (2012)
  • Chen Z, Kloosterman F, Brown EN, Wilson MA, “Uncovering spatial topology represented by rat hippocampal population neuronal codes”, Journal of Computational Neuroscience, Volume 33, Issue 2, pp 227-255, (2012)
  • Chen Z, Kloosterman F, Layton S, Wilson MA, “Transductive Neural Decoding for Unsorted Neuronal Spikes of Rat Hippocampus”, Conf Proc IEEE Eng Med Biol Soc., 2012: 1310–1313, (2012)
  • Navratilova Z, Giocomo LM, Fellous JM, Hasselmo ME, McNaughton BL., “Phase precession and variable spatial scaling in a periodic attractor map model of medial entorhinal grid cells with realistic after-spike dynamics.”, Hippocampus., 22(4):772-89., (2012)
  • Cohen J*, Haesler S*, Vong L, Lowell B, Uchida N., “Neuron-type-specific signals for reward and punishment in the ventral tegmental area.”, Nature., 482(7383):85-8., (2012)
  • Bonin V, Histed MH, Yurgenson S, Reid RC, “Local diversity and fine-scale organization of receptive fields in mouse visual cortex”, The Journal of Neuroscience, 31(50):18506-21, (2011)
  • Kloosterman F, “Analysis of Hippocampal Memory Replay Using Neural Population Decoding”, Neuronal Network Analysis, pp 259-282, (2011)
  • Peyrache A, Battaglia FP, Destexhe A , “Inhibition recruitment in prefrontal cortex during sleep spindles and gating of hippocampal inputs”, Proc Natl Acad Sci U S A. , 108(41):17207-12., (2011)
  • Battaglia FP, Pennartz CM , “The construction of semantic memory: grammar-based representations learned from relational episodic information”, Frontiers in Computational Neuroscience, 5:36., (2011)
  • Battaglia FP, Benchenane K, Sirota A, Pennartz CM, Wiener SI, “The hippocampus: hub of brain network communication for memory”, Trends in Cognitive Sciences, 15(7):310-8, (2011)
  • Benchenane K, Tiesinga PH, Battaglia FP , “Oscillations in the prefrontal cortex: a gateway to memory and attention”, Current Opinion in Neurobiology, 21(3):475-85, (2011)
  • Farrow K and Masland RH, “Physiological clustering of visual channels in the mouse retina”, Journal of Neurophysiology, 105(4):1516-30, (2011)
  • Takeoka A, Jindrich DL, Muñoz-Quiles C, Zhong H, van den Brand R, Pham DL, Ziegler MD, Ramon-Cueto A, Roy RR, Edgerton VR, and Phelps PE, “Axon regeneration can facilitate or suppress hindlimb function after olfactory ensheathing glia transplantation”, Journal of Neuroscience , 11, (2011)
  • Linaro D, Storace M, Giugliano M, “Accurate and fast simulation of channel noise in conductance-based model neurons by diffusion approximation”, PLoS Computational Biology, 7(3):e1001102., (2011)
  • Blumhagen F, Zhu P, Shum J, Schärer YP, Yaksi E, Deisseroth K, Friedrich RW, “Neuronal filtering of multiplexed odour representations”, Nature, Nov 13;479(7374):493-8 , (2011)
  • Kazama, H., Yaksi, E., Wilson, RI., “Cell death triggers olfactory circuit plasticity via glial signaling in Drosophila.”, Journal of Neuroscience , 31(21):7619-30, (2011)
  • Alme CB, Buzzetti RA, Marrone DF, Leutgeb JK, Chawla MK, Schaner MJ, Bohanick JD, Khoboko T, Leutgeb S, Moser EI, Moser MB, McNaughton BL, Barnes CA., “Hippocampal Granule Cells Opt for Early Retirement.”, Hippocampus., 20(10):1109-23., (2010)
  • Colgin LL, Leutgeb S, Jezek K, Leutgeb JK, Moser EI, McNaughton BL, Moser M-B , “Attractor-map versus autoassociation based attractor dynamics in the hippocampal network”, Journal of Neurophysiology, 104(1):35-50, (2010)
  • Benchenane K, Peyrache A, Khamassi M, Tierney PL, Gioanni Y, Battaglia FP, Wiener SI , “Coherent theta oscillations and reorganization of spike timing in the hippocampal- prefrontal network upon learning”, Neuron, 66(6):921-36, (2010)
  • Takeoka A, Kubasak MD, Zhong H, Kaplan JA, Roy RR, Phelps PE, “Noradrenergic innervation of the rat spinal cord caudal to a complete spinal cord transection: Effects of olfactory ensheathing glia”, Experimental Neurology , 1, (2010)
  • Johnson LA, Euston DR, Tatsuno M, McNaughton BL, “Stored-trace reactivation in rat prefrontal cortex is correlated with down-to-up state fluctuation density”, J Neurosci, 30(7):2650-61., (2010)
  • Chou YH, Spletter ML, Yaksi E, Leong JC, Wilson RI, Luo L., “Diversity and wiring variability of olfactory local interneurons in the Drosophila antennal lobe”, Nat Neurosci., Apr;13(4):439-49, (2010)
  • Yaksi, E. and Wilson, R.I. , “Electrical coupling between olfactory glomeruli.”, Neuron, 67: 1034-47, (2010)
  • McNaughton BL, “Cortical hierarchies, sleep, and the extraction of knowledge from memory”, Artificial Intelligence, 174:205-214., (2010)
  • Chou, Y.H.*, Spletter, M.*, Yaksi, E.*, Leong, J.C.S., Wilson, R.I., Liqun, L., “Developmental and functional diversity of local interneurons in fruit fly antennal lobe.”, Nature Neuroscience , 13: 439-49, (2010)
  • MH Histed, V Bonin, RC Reid, “Direct activation of sparse, distributed populations of cortical neurons by electrical microstimulation.”, Neuron, 63(4):508-22, (2009)
  • TJ Davidson, F Kloosterman, MA Wilson, “Hippocampal replay of extended experience”, Neuron, 63(4): 497–507, (2009)
  • Lansink CS, Golstein PM, Lankelma JV, McNaughton BL, Pennartz, CM , “Hippocampus leads ventral striatum in replay of place-reward information.”, PLoS Biol., 7(8):e1000173., (2009)
  • Peyrache A, Benchenane K, Khamassi M, Wiener SI, Battaglia FP , “Replay of rule-learning related neural patterns in the prefrontal cortex during sleep.”, Nat Neurosci., 12(7):919-26., (2009)
  • DP Nguyen, F Kloosterman, R Barbieri, EN Brown, MA Wilson, “Characterizing the dynamic frequency structure of fast oscillations in the rodent hippocampus”, Frontiers in integrative neuroscience, 3:11, (2009)
  • F Kloosterman, TJ Davidson, SN Gomperts, SP Layton, G Hale, DP Nguyen, MA Wilson, “Micro-drive array for chronic in vivo recording: drive fabrication”, Journal of visualized experiments, 26, pii: 1094, (2009)
  • Takeoka A, Kubasak MD, Zhong H, Roy RR, Phelps PE, “Serotonergic innervation of the caudal spinal stump in rats after complete spinal transection: Effect of olfactory ensheathing glia”, Journal of Comparative Neurology , 6, (2009)
  • Cellot G, Cilia E, Cipollone S, Rancic V, Sucapane A, Giordani S, Gambazzi L, Markram H, Grandolfo M, Scaini D, Gelain F, Casalis L, Prato M, Giugliano M, Ballerini L., “Carbon nanotubes might improve neuronal performance by favouring electrical shortcuts.”, Nat Nanotechnol., 4(2):126-33., (2009)
  • S Katzner, I Nauhaus, A Benucci, V Bonin, DL Ringach, M Carandini, “Local origin of field potentials in visual cortex”, Neuron, 61(1):35-41, (2009)
  • Friedrich, R.W., Yaksi, E., Judkewitz, B.,Wiechert, M.T. , “Processing of odor representations by neural circuits in the olfactory bulb.”, Annals of the New York Academy of Sciences, 1170: 293-7, (2009)
  • Yaksi, E. *, von Saint Paul, F. *, Bundschuh, S., Niessing, J., Friedrich, R.W. , “Transformation of odor representations in target areas of the olfactory bulb.”, Nature Neuroscience , 12: 474-82, (2009)
  • Takehara-Nishiuchi K., McNaughton B.L., “Spontaneous changes in neocortical code for associative memory during consolidation.”, Science., 322(5903):960-3., (2008)
  • Mante V, Bonin V, Carandini M., “Functional mechanisms shaping lateral geniculate responses to artificial and natural stimuli.”, Neuron, 58(4):625-38., (2008)
  • V Mante, V Bonin, M Carandini, “Functional mechanisms shaping lateral geniculate responses to artificial and natural stimuli”, Neuron, 58(4):625-38, (2008)
  • Marrone, D.F., Schaner, M.J., McNaughton, B.L., Worley, P.F., and Barnes, C.A. , “Immediate-early gene expression at rest recapitulates recent experience.”, J Neurosci, 28(5):1030-3, (2008)
  • Tabor, R., Yaksi, E., Friedrich, R.W. , “Multiple functions of GABA A and GABA B receptors during pattern processing in the zebrafish olfactory bulb.”, European Journal of Neuroscience , 28: 117-27, (2008)
  • Haesler S, Rochefort C, Georgi B, Licznerski P, Osten P, Scharff C., “Incomplete and inaccurate vocal imitation after knockdown of FoxP2 in songbird basal ganglia nucleus Area X.”, PLoS Biology, 5(12):e321., (2007)
  • Cowen, S.L. and McNaughton, B.L. , “Selective delay activity in the medial prefrontal cortex of the rat: Contribution of sensorimotor information and contingency.”, J Neurophysiol., 98(1):303-16., (2007)
  • Heskin-Sweezie R, Farrow K, Broussard DM., “Adaptive rescaling of central sensorimotor signals is preserved after unilateral vestibular damage.”, Brain Research, 1143:132-42., (2007)
  • Yaksi, E., Judkewitz, B., Friedrich, R.W., “Topological reorganization of odor representations in the olfactory bulb.”, PLoS Biology , 5: e178, (2007)
  • Farrow K, Haag J, Borst A., “Non-linear, binocular interactions underlying flow-field selectivity of a motion sensitive neuron.”, Nature Neuroscience, 9(10):1312-20., (2006)
  • McNaughton BL, Battaglia FP, Jensen O, Moser EI and Moser MB , “Path-integration and the neural basis of the ‘cognitive map’”, Nat Rev Neurosci., 7(8):663-78., (2006)
  • V Bonin, V Mante, M Carandini, “The statistical computation underlying contrast gain control.”, J Neurosci, 26(23):6346-53., (2006)
  • Sargolini, F., Fyhn, M., Hafting, T., McNaughton, B.L., Witter, M.P., Moser, M-B. and Moser, E.I. , “Conjunctive representation of position, direction and velocity in entorhinal cortex”, Science., 312(5774):758-62., (2006)
  • Yaksi, E., and Friedrich, R., “Reconstruction of firing rate changes across neuronal populations by temporally deconvolved Ca2+ imaging.”, Nature Methods , 3: 377-83, (2006)
  • Scharff C, Haesler S., “An evolutionary perspective on FoxP2: strictly for the birds?”, Current Opinion in Neurobiology, 15(6):694-703., (2005)
  • Mante V, Frazor RA, Bonin V, Geisler WS, Carandini M., “Independence of luminance and contrast in natural scenes and in the early visual system.”, Nat Neurosci., 8(12):1690-7., (2005)
  • V Bonin, V Mante, M Carandini, “The suppressive field of neurons in lateral geniculate nucleus.”, J Neurosci, 25(47):10844-56., (2005)
  • Feng, B., Bulchand, S., Yaksi, E., Friedrich, R. W., and Jesuthasan, S., “The recombination activation gene 1 (Rag1) is expressed in a subset of zebrafish olfactory neurons but is not essential for axon targeting or amino acid detection.”, BMC Neuroscience , 6, 46, (2005)
  • Li, J., Mack, J. A., Souren, M., Yaksi, E., Higashijima, S., Mione, M., Fetcho, J. R., and Friedrich, R.W., “Early development of functional spatial maps in the zebrafish olfactory bulb.”, Journal of Neuroscience , 25: 5784-5795, (2005)
  • Battaglia FP, G.R. Sutherland GR and B.L. McNaughton BL , “Hippocampal sharp wave bursts coincide with neocortical “up-state” transitions,”, Learn Mem., 11(6):697-704., (2004)
  • F Kloosterman, T van Haeften, FH Lopes da Silva, “Two reentrant pathways in the hippocampal-entorhinal system”, Hippocampus, 14(8):1026-39, (2004)
  • Haesler S, Wada K, Nshdejan A, Morrisey EE, Lints T, Jarvis ED, Scharff C., “FoxP2 expression in avian vocal learners and non-learners.”, Journal of Neuroscience, 24(13):3164-75., (2004)
  • Tabor, R., Yaksi, E., Weislogel, J. M., and Friedrich, R. W., “Processing of odor mixtures in the zebrafish olfactory bulb.”, Journal of Neuroscience , 24: 6611-6620, (2004)